Good afternoon, everyone. Thank you all for participating in today's conference call. On the call from Certara, we have William Feehery, Chief Executive Officer, and John Gallagher, Chief Financial Officer. Earlier today, Certara released financial results for the quarter ended September 30, 2025. A copy of the press release is available on the company's website. Before we begin, I would like to remind you that management will make statements during this call that include forward-looking statements, and actual results may differ materially from those expressed or implied in the forward-looking statements. Please refer to slide two in the accompanying materials for additional information, which you can find on the company's Investor Relations website. In the remarks or responses to questions, management may mention some non-GAAP financial measures.
Reconciliations of these non-GAAP financial measures to the most directly comparable GAAP measures are available in the recent earnings press release available on the company's website. Please refer to the reconciliation tables in the accompanying materials for additional information. This conference call contains time-sensitive information and is accurate only as to live broadcast today, November 6, 2025. Certara disclaims any obligation, except as required by law, to update or revise any financial projections or forward-looking statements, whether because of new information, future events, or otherwise. With that, I will turn the call over to William.
Thank you, David, and good afternoon, everyone. Thank you for joining Certara's Q3 earnings call. John and I will begin with prepared remarks, and then we will take your questions. During the Q3, our team continued to execute against our 2025 goals while also positioning Certara for long-term success by investing in our R&D and commercial teams. Q3 revenue of $104.6 million was in line with our expectations, representing 10% reported year-over-year growth. We outperformed internal profitability expectations, delivering adjusted EBITDA of $35.2 million, representing a margin of 34%. Our team remains focused on investing for growth, with R&D up 24% versus the same period a year ago and increasing to 10% of revenue from 9% in the prior year period. On the other hand, Q3 bookings of $96.6 million came in below our expectations, representing growth of 1%.
Among our Tier 1 services customers, we observed cautious spending behavior, with some customers pushing deal timelines later into the Q4 and into 2026. Taking this into account, we are narrowing our revenue guidance to $415 million-$420 million, which we believe reflects the most likely range of outcomes for the year based on our performance to date. We have raised our adjusted EBITDA margin guidance to the high end of our previous guidance range and raised our adjusted EPS guidance to reflect a continuation of outperformance against our profitability targets and the impact of share repurchase activity. We continue to see pockets of outperformance throughout our portfolio, including our Simcyp PBPK software and our QSP services. However, some of our customers are still dealing with factors that impact decision-making timelines and R&D allocation decisions.
As large pharma customers adjust focus with their R&D programs and now onshoring initiatives that are impacting personnel and resource allocations, we have seen a slowdown in deal completion timelines, particularly in regulatory services and Biosim Services. This slowdown has persisted into the beginning of the Q4, conflicting with historical seasonality trends. We are closely monitoring consumer spending patterns as we begin to plan for 2026. At a high level, we continue to see several positive leading indicators for the biosimulation market and for Certara. Among large pharma customers, the use of Model-informed Drug Development is growing throughout all stages of development. Customers are adopting biosimulation solutions for use in dosing, efficacy, and toxicity analysis, and using the technology earlier as we expand our software capabilities into discovery and preclinical. Among our smaller customers, the adoption of biosimulation is accelerating through the use of our technology-enabled services.
As drug developers look to optimize their speed and efficiency, they are often attracted to areas of our business such as QSP, which can help streamline decision-making and trial design in both the preclinical and clinical stages. Since our IPO, we have seen a significant increase in both the number of customers using our products and services as well as the wallet share of Certara within larger organizations. Most of all, we are encouraged by our evolving relationships with key stakeholders and users and customers. Earlier this year, we hosted our second annual Certainty Conference, bringing together hundreds of our users to discuss the future of Model-Informed Drug Development. In early October, we held the same conference in Barcelona with our European user base, and the experience was very productive for all parties.
At both events, I had the opportunity to discuss Certara's products with customers, where they provided feedback on our software, suggested new features and functionality, and learned about our new products and long-term vision for the Certara platform. There is tremendous value that can be gained by making more informed decisions earlier in the drug development lifecycle, which is why we are moving into discovery and preclinical. We closed the ChemAxon acquisition a year ago in early October of 2024, which gave Certara an established product suite in discovery with synergistic capabilities relative to Simcyp. In the first 12 months under Certara ownership, ChemAxon has continued to grow and is on track to reach corporate average margins by the end of the year. Elsewhere, our services group has grown preclinical work in QSP, especially since the FDA's guidance promoting the use of new approach methodologies.
QSP has grown ahead of the rest of the biosimulation business on a year-to-date basis and is becoming an increasingly important part of our business. Now, turning to our financial performance. In software, bookings of $40.8 million represented growth of 17%. We saw solid bookings performance in Tiers 1 and 3, which were in line with expectations, while Tier 2 was below expectations, which we attribute more to timing than anything. Software revenue of $43.8 million grew 22% on a reported basis and 6% organically, led by strong growth from Simcyp, in addition to $5.6 million of contribution from ChemAxon. In services, bookings of $55.8 million declined 9% on a reported basis. Driven by slowness in the Tier 1 customer base. We have continued to observe cautious decision-making among large pharma customers into the Q4.
Services revenue of $60.8 million grew 3% on a reported basis and on an organic basis, led by growth in QSP services. On the innovation front, 2025 has been our most active product development year since our IPO. We've embedded artificial intelligence into both our development processes and our products, accelerating the pace of new model creation following our VIA Science acquisition. We launched several major products this quarter. Pinnacle 21 Enterprise, a cloud-based upgrade improving regulatory data compliance and submission speed. Phoenix Cloud, which transitions our customers from on-premise to Certara Cloud deployment and provides significant upgrades to product functionality, and Certara IQ, our new software for QSP modeling, designed to expand the use of biosimulation across discovery and clinical phases. Early customer feedback on these releases has been excellent, and we're confident they strengthen our long-term software growth engine.
Last year, we announced the strategic review of our regulatory services business. To date, we have made significant progress in our evaluation, including dialogue with external parties and significant internal analysis of best practices. As we evaluate our business, we recognize that regulatory writing performance has been inconsistent. Simultaneously, we value the regulatory writing business's ability to generate cash, which we have used to invest in growth and support recent share repurchases. At this point in time, we are in the final stages of our process and intend to share a definitive outcome before the end of 2025. To close, we remain focused on delivering our 2025 plan and entering 2026 well-prepared to capitalize on the opportunities ahead. Although we are seeing some variability in Tier 1 services, we are encouraged by the widespread momentum of biosimulation adoption in drug development.
I'll now hand things over to John Gallagher to discuss our financial results in more detail.
Thank you, William. Hello, everyone. Total revenue for the three months ended September 30, 2025, was $104.6 million, representing year-over-year growth of 10% on a reported basis and on a constant currency basis. Total bookings in the Q4 were $96.6 million, which increased 1% from the prior year period on a reported basis. Trailing 12-month bookings were $471.4 million, increasing 12% on a reported basis. Excluding ChemAxon, total company organic bookings declined 4% compared with the Q3 last year. Software revenue was $43.8 million in the Q4, which increased 22% over the prior year period on a reported basis and 21% on a constant currency basis. Organic growth was 6% in the quarter, driven by strong growth from Simcyp. ChemAxon contributed $5.6 million to our reported revenue, which was in line with our expectations.
Ratable and subscription revenue accounted for 65% of Q3 software revenues, or 71% excluding ChemAxon, slightly down from 72% in the prior year period. Software bookings were $40.8 million in the Q4, which increased 17% from the prior year period. Q3 bookings included $4.2 million of ChemAxon bookings. Organic software bookings grew 5% versus the prior year. Trailing 12-month software bookings were $187.9 million, up 23% year-over-year. The software net retention rate was 104 in the quarter, consistent with our full-year plan. Looking at our Software Bookings Performance by Tier, we saw strong performance in Tiers 1 and 3, driven by the continued adoption of our software. In Tier 1, we saw some timing-related slowness due to renewals, which we expect to normalize in the Q4.
Now, turning to services revenue, which was $60.8 million in the Q4, up 3% versus the prior year period on a reported basis and on a constant currency basis. We saw strong performance from our QSP and Simcyp services businesses in the quarter, which was partially offset by softness in the regulatory services. Technology-driven services bookings in the Q4 were $55.8 million, which declined 9% from the prior year period. TTM services bookings were $283.5 million, up 6% as compared to the prior year. During the quarter, we saw softer performance from Tier 1 customers and biosimulation services, driven by spending hesitancy among our largest customers. In regulatory, bookings declined in the double digits, while biosimulation services were down low single digits. Total cost of revenue for the Q4 of 2025 was $39.7 million, an increase from $37.2 million in the Q4 of 2024.
Primarily due to higher software amortization and consulting expenses, offset by lower employee-related costs. Total operating expenses for the Q4 of 2025 were $61.9 million, an increase from $55 million in the Q4 of 2024, primarily due to higher employee-related costs in sales and marketing and R&D. Adjusted EBITDA for the Q4 of 2025 was $35.2 million, an increase from $33.1 million in the Q4 of 2024. Adjusted EBITDA margin in the quarter was 34%. Wrapping up the income statement, net income for the Q4 of 2025 was $1.5 million, compared to a net loss of $1.4 million in the Q4 of 2024. Reported adjusted net income for the Q4 of 2025 was $22.2 million, compared to $20.3 million for the Q4 of 2024. Diluted earnings per share for the Q4 of 2025 was $0.01, compared to a loss of $0.01 per share in the Q4 of 2024.
Adjusted diluted earnings per share for the Q4 of 2025 was $0.14. Compared to $0.13 per share in the Q4 of last year. Moving to the balance sheet, we finished the quarter with $172.7 million in cash and cash equivalents. As of September 30, 2025, we had $293.1 million of outstanding borrowings on our term loan and full availability under our revolving credit facility. Subsequent to the end of the quarter, we executed a reprice of our outstanding term loan, which is expected to save $700,000 annually in interest expense beginning in 2026. Earlier this year, our board authorized a $100 million share repurchase program. We have repurchased approximately $41 million of stock during 2025. With year-to-date results in our outlook for the Q4, we are providing the following guidance for 2025.
We are narrowing the revenue range to $415 million-$420 million, representing 8%-9% growth compared with 2024. We expect ChemAxon to contribute software revenue of $23 million-$25 million. We expect an adjusted EBITDA margin around 32%, which is the high end of our previous guidance range, reflecting outperformance versus our internal profitability expectations to date. We expect adjusted EPS in the range of $0.45-$0.47 per share, fully diluted shares in the range of 160 million-162 million, and a tax rate in the range of 25%-30%. I will now turn the call back over to our CEO, William Feehery, for closing remarks.
Thank you, John. To summarize our message today, our team is working diligently to execute our growth and profitability goals despite a mixed operating environment. We are excited to bring several new products to market and look forward to providing further updates on our progress early next year. Operator, can you please open the line for questions?